3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13444

Details:

PFam ID : PF13444

PFam Domain Description : Acetyltransferase (GNAT) domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 582

Average sequence length: 102.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13444	F0EAX2_9PSED_33_83	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13444	Q7U955_SYNPX_46_148	99.6

Sequence based PCA Plot of the family - PF13444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=19
Motif2 Start=2 Length=8
Motif3 Start=95 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay