3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13443

Details:

PFam ID : PF13443

PFam Domain Description : Cro/C1-type HTH DNA-binding domain

Number of Sequence in 50% Dataset : 528

Number of Sequence in Full Dataset : 1787

Average sequence length: 60.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13443	B4CXG6_9BACT_33_109	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13443	D6E9B7_9ACTN_6_74	99.9

Sequence based PCA Plot of the family - PF13443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=56 Length=8
Motif3 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay