3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13442

Details:

PFam ID : PF13442

PFam Domain Description : Cytochrome C oxidase, cbb3-type, subunit III

Number of Sequence in 50% Dataset : 660

Number of Sequence in Full Dataset : 3918

Average sequence length: 80.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13442	B4CXG6_9BACT_33_109	99.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13442	B4CXG6_9BACT_33_109	99.9

Sequence based PCA Plot of the family - PF13442 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay