3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13438

Details:

PFam ID : PF13438

PFam Domain Description : Domain of unknown function (DUF4113)

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 588

Average sequence length: 68.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13438	A8ZS28_DESOH_351_396	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13438	Q2YI99_9BACT_345_430	100

Sequence based PCA Plot of the family - PF13438 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=32 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay