3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13437

Details:

PFam ID : PF13437

PFam Domain Description : HlyD family secretion protein

Number of Sequence in 50% Dataset : 679

Number of Sequence in Full Dataset : 1781

Average sequence length: 111.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13437	D8K498_NITWC_20_164	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13437	A6CGR8_9PLAN_247_319	100

Sequence based PCA Plot of the family - PF13437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay