3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13435

Details:

PFam ID : PF13435

PFam Domain Description : Cytochrome c554 and c-prime

Number of Sequence in 50% Dataset : 245

Number of Sequence in Full Dataset : 609

Average sequence length: 121.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13435	C3Z4N3_BRAFL_115_268	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13435	Q1JY94_DESAC_38_162	100

Sequence based PCA Plot of the family - PF13435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay