3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13434

Details:

PFam ID : PF13434

PFam Domain Description : L-lysine 6-monooxygenase (NADPH-requiring)

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 466

Average sequence length: 315.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13434	C3Z4N3_BRAFL_115_268	94

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13434	SID1_USTMA_35_445	100

Sequence based PCA Plot of the family - PF13434 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=129 Length=8
Motif2 Start=69 Length=8
Motif3 Start=259 Length=11
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay