3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13432

Details:

PFam ID : PF13432

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 3023

Number of Sequence in Full Dataset : 5114

Average sequence length: 64.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13432	Q2SJM4_HAHCH_52_143	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13432	B5EEP8_GEOBB_273_339	99.9

Sequence based PCA Plot of the family - PF13432 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay