3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13431

Details:

PFam ID : PF13431

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 377

Average sequence length: 38.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13431	C5E0A4_ZYGRC_60_167	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13431	D8NLG7_RALSO_372_405	99.7

Sequence based PCA Plot of the family - PF13431 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=18
Motif2 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay