3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13427

Details:

PFam ID : PF13427

PFam Domain Description : Domain of unknown function (DUF4111)

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 143

Average sequence length: 102.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13427	Q93I93_STAAU_1_65	82

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13427	D2KHP5_PSEAE_150_200	100

Sequence based PCA Plot of the family - PF13427 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay