3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13425

Details:

PFam ID : PF13425

PFam Domain Description : O-antigen ligase like membrane protein

Number of Sequence in 50% Dataset : 1578

Number of Sequence in Full Dataset : 2393

Average sequence length: 155.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13425	E7C4X6_9BACT_1_99	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13425	E8UAI3_DEIML_193_373	99.9

Sequence based PCA Plot of the family - PF13425 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay