3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13424

Details:

PFam ID : PF13424

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 4331

Number of Sequence in Full Dataset : 13236

Average sequence length: 76.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13424	F1KRJ2_ASCSU_1118_1230	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13424	F2UC04_9EUKA_1_43	99.8

Sequence based PCA Plot of the family - PF13424 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=77 Length=38
Motif2 Start=45 Length=31

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay