3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13423

Details:

PFam ID : PF13423

PFam Domain Description : Ubiquitin carboxyl-terminal hydrolase

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 180

Average sequence length: 335.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13423	A6SC49_BOTFB_545_702	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13423	C5E2H8_LACTC_504_839	97.7

Sequence based PCA Plot of the family - PF13423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=11
Motif2 Start=2 Length=8
Motif3 Start=238 Length=8
Motif4 Start=327 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay