3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13422

Details:

PFam ID : PF13422

PFam Domain Description : Domain of unknown function (DUF4110)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 87

Average sequence length: 93.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13422	A8PW39_MALGO_356_412	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13422	B7GD13_PHATC_604_710	100

Sequence based PCA Plot of the family - PF13422 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=44 Length=8
Motif2 Start=12 Length=24

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay