3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13420

Details:

PFam ID : PF13420

PFam Domain Description : Acetyltransferase (GNAT) domain

Number of Sequence in 50% Dataset : 392

Number of Sequence in Full Dataset : 1501

Average sequence length: 150.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13420	E7R7A4_PICAD_58_191	91.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13420	Q49UX6_STAS1_115_290	99.8

Sequence based PCA Plot of the family - PF13420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=70 Length=11
Motif2 Start=54 Length=8
Motif3 Start=88 Length=8
Motif4 Start=128 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay