3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13419

Details:

PFam ID : PF13419

PFam Domain Description : Haloacid dehalogenase-like hydrolase

Number of Sequence in 50% Dataset : 3050

Number of Sequence in Full Dataset : 11623

Average sequence length: 180.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13419	C4RJ31_9ACTO_3_55	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13419	D8QHJ3_SCHCM_10_190	99.5

Sequence based PCA Plot of the family - PF13419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=134 Length=11
Motif4 Start=120 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay