3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13418

Details:

PFam ID : PF13418

PFam Domain Description : Galactose oxidase, central domain

Number of Sequence in 50% Dataset : 717

Number of Sequence in Full Dataset : 2081

Average sequence length: 50.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13418	Q2BPK4_9GAMM_16_76	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13418	A9GK61_SORC5_261_309	99.4

Sequence based PCA Plot of the family - PF13418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=35 Length=18
Motif2 Start=12 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay