3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13417

Details:

PFam ID : PF13417

PFam Domain Description : Glutathione S-transferase, N-terminal domain

Number of Sequence in 50% Dataset : 292

Number of Sequence in Full Dataset : 5351

Average sequence length: 78.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13417	Q2BPK4_9GAMM_16_76	85.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13417	B8BWY6_THAPS_56_127	100

Sequence based PCA Plot of the family - PF13417 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=61 Length=8
Motif2 Start=17 Length=8
Motif3 Start=41 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay