3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13416

Details:

PFam ID : PF13416

PFam Domain Description : Bacterial extracellular solute-binding protein

Number of Sequence in 50% Dataset : 1722

Number of Sequence in Full Dataset : 5660

Average sequence length: 301.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13416	B3R0I5_PHYMT_54_456	82.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13416	C5QRB0_STAEP_5_112	97.8

Sequence based PCA Plot of the family - PF13416 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=20
Motif2 Start=52 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay