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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13415
Details:

PFam ID : PF13415

PFam Domain Description : Galactose oxidase, central domain

Number of Sequence in 50% Dataset : 386

Number of Sequence in Full Dataset : 1225

Average sequence length: 52.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13415A3WSR1_9BRAD_24_90No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13415A4BSJ1_9GAMM_224_27499.1
Sequence based PCA Plot of the family - PF13415 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=38 Length=8
Motif3 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay