3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13415 Details: PFam ID : PF13415 PFam Domain Description : Galactose oxidase, central domain Number of Sequence in 50% Dataset : 386 Number of Sequence in Full Dataset : 1225 Average sequence length: 52.3 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13415A3WSR1_9BRAD_24_90No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13415A4BSJ1_9GAMM_224_27499.1 Sequence based PCA Plot of the family - PF13415 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=14 Length=17Motif2 Start=38 Length=8Motif3 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF13415
PFam Domain Description : Galactose oxidase, central domain
Number of Sequence in 50% Dataset : 386
Number of Sequence in Full Dataset : 1225
Average sequence length: 52.3
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER