3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13414

Details:

PFam ID : PF13414

PFam Domain Description : TPR repeat

Number of Sequence in 50% Dataset : 9797

Number of Sequence in Full Dataset : 28970

Average sequence length: 66.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13414	A3WSR1_9BRAD_24_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13414	B4DB17_9BACT_84_178	98.4

Sequence based PCA Plot of the family - PF13414 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=53 Length=14
Motif3 Start=2 Length=8
Motif4 Start=18 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay