3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13413

Details:

PFam ID : PF13413

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 740

Average sequence length: 61.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13413	A3WSR1_9BRAD_24_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13413	E8UE77_TAYEM_25_94	100

Sequence based PCA Plot of the family - PF13413 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=27 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay