3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13412

Details:

PFam ID : PF13412

PFam Domain Description : Winged helix-turn-helix DNA-binding

Number of Sequence in 50% Dataset : 462

Number of Sequence in Full Dataset : 3690

Average sequence length: 46.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13412	A3WSR1_9BRAD_24_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13412	B3DVF4_METI4_9_56	99.9

Sequence based PCA Plot of the family - PF13412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=35 Length=8
Motif3 Start=14 Length=8
Motif4 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay