3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13411

Details:

PFam ID : PF13411

PFam Domain Description : MerR HTH family regulatory protein

Number of Sequence in 50% Dataset : 294

Number of Sequence in Full Dataset : 5033

Average sequence length: 68.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13411	A3WSR1_9BRAD_24_90	75.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13411	C0WS60_LACBU_3_71	100

Sequence based PCA Plot of the family - PF13411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=60 Length=8
Motif3 Start=74 Length=8
Motif4 Start=33 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay