3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13410

Details:

PFam ID : PF13410

PFam Domain Description : Glutathione S-transferase, C-terminal domain

Number of Sequence in 50% Dataset : 567

Number of Sequence in Full Dataset : 3002

Average sequence length: 87.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13410	D3V1R3_XENBS_1_45	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13410	Q0FDH8_9RHOB_91_177	98.7

Sequence based PCA Plot of the family - PF13410 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=114 Length=11
Motif4 Start=150 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay