3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13409

Details:

PFam ID : PF13409

PFam Domain Description : Glutathione S-transferase, N-terminal domain

Number of Sequence in 50% Dataset : 118

Number of Sequence in Full Dataset : 1262

Average sequence length: 84.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13409	C5EHX1_9FIRM_7_133	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13409	D2VLV0_NAEGR_17_106	97.8

Sequence based PCA Plot of the family - PF13409 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=34 Length=8
Motif3 Start=1 Length=8
Motif4 Start=50 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay