3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13406

Details:

PFam ID : PF13406

PFam Domain Description : Transglycosylase SLT domain

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 998

Average sequence length: 244.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13406	C6J702_9BACL_78_255	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13406	C6WX44_METML_31_364	100

Sequence based PCA Plot of the family - PF13406 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=54 Length=8
Motif3 Start=43 Length=8
Motif4 Start=24 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay