3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13405

Details:

PFam ID : PF13405

PFam Domain Description : EF-hand domain

Number of Sequence in 50% Dataset : 709

Number of Sequence in Full Dataset : 2158

Average sequence length: 32.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13405	B8FMC0_DESAA_2_46	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13405	D7FR08_ECTSI_1721_1760	86

Sequence based PCA Plot of the family - PF13405 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay