3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13404

Details:

PFam ID : PF13404

PFam Domain Description : AsnC-type helix-turn-helix domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 1685

Average sequence length: 42.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13404	B8FMC0_DESAA_2_46	5.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13404	Q8PVC5_METMA_4_45	95.0

Sequence based PCA Plot of the family - PF13404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=26 Length=8
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay