3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13403

Details:

PFam ID : PF13403

PFam Domain Description : Hint domain

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 561

Average sequence length: 135.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13403	Q8EW84_MYCPE_270_605	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13403	A3VKC8_9RHOB_32_181	100

Sequence based PCA Plot of the family - PF13403 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=139 Length=11
Motif3 Start=2 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay