3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13401

Details:

PFam ID : PF13401

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 683

Number of Sequence in Full Dataset : 1846

Average sequence length: 135.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13401	B6BEI2_9RHOB_540_588	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13401	B2AQ17_PODAN_63_222	100

Sequence based PCA Plot of the family - PF13401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=186 Length=8
Motif2 Start=171 Length=8
Motif3 Start=205 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay