3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13399

Details:

PFam ID : PF13399

PFam Domain Description : LytR cell envelope-related transcriptional attenuator

Number of Sequence in 50% Dataset : 244

Number of Sequence in Full Dataset : 663

Average sequence length: 91.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13399	B6BEI2_9RHOB_540_588	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13399	D2BEJ5_STRRD_392_506	100

Sequence based PCA Plot of the family - PF13399 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay