3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13397

Details:

PFam ID : PF13397

PFam Domain Description : Domain of unknown function (DUF4109)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 133

Average sequence length: 101.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13397	C0W1G9_9ACTO_2_91	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13397	C0W1G9_9ACTO_2_91	100

Sequence based PCA Plot of the family - PF13397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=17
Motif2 Start=7 Length=8
Motif3 Start=62 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay