3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13395

Details:

PFam ID : PF13395

PFam Domain Description : HNH endonuclease

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 334

Average sequence length: 52.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13395	D1N5W2_9BACT_20_175	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13395	B8IGP3_METNO_215_272	100

Sequence based PCA Plot of the family - PF13395 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=21
Motif2 Start=1 Length=8
Motif3 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay