3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13394

Details:

PFam ID : PF13394

PFam Domain Description : 4Fe-4S single cluster domain

Number of Sequence in 50% Dataset : 654

Number of Sequence in Full Dataset : 3941

Average sequence length: 108.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13394	D1N5W2_9BACT_20_175	99.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13394	A3ZZ73_9PLAN_114_193	100

Sequence based PCA Plot of the family - PF13394 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=57 Length=8
Motif2 Start=132 Length=8
Motif3 Start=104 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay