3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13393

Details:

PFam ID : PF13393

PFam Domain Description : Histidyl-tRNA synthetase

Number of Sequence in 50% Dataset : 305

Number of Sequence in Full Dataset : 2465

Average sequence length: 281.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13393	E5B9D1_ERWAM_28_303	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13393	E3I4K7_RHOVT_4_367	100

Sequence based PCA Plot of the family - PF13393 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=101 Length=17
Motif2 Start=64 Length=11
Motif3 Start=353 Length=11
Motif4 Start=332 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay