3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13392

Details:

PFam ID : PF13392

PFam Domain Description : HNH endonuclease

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 638

Average sequence length: 45.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13392	D8UN71_9MICC_49_100	16.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13392	C3QU81_9BACE_58_104	92.7

Sequence based PCA Plot of the family - PF13392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=29 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay