3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13391

Details:

PFam ID : PF13391

PFam Domain Description : HNH endonuclease

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 710

Average sequence length: 67.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13391	A2H5D1_TRIVA_6_62	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13391	B0D4R2_LACBS_118_204	97.8

Sequence based PCA Plot of the family - PF13391 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=50 Length=8
Motif3 Start=16 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay