3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13387

Details:

PFam ID : PF13387

PFam Domain Description : Domain of unknown function (DUF4105)

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 273

Average sequence length: 169.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13387	A6GNT7_9BURK_22_183	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13387	E1VH67_9GAMM_141_323	100

Sequence based PCA Plot of the family - PF13387 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=160 Length=8
Motif3 Start=38 Length=8
Motif4 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay