3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13386

Details:

PFam ID : PF13386

PFam Domain Description : Family description

Number of Sequence in 50% Dataset : 160

Number of Sequence in Full Dataset : 456

Average sequence length: 202.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13386	Q8KE74_CHLTE_1_130	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13386	D2MUM7_CAMJE_7_112	97.1

Sequence based PCA Plot of the family - PF13386 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay