3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13385

Details:

PFam ID : PF13385

PFam Domain Description : Concanavalin A-like lectin/glucanases superfamily

Number of Sequence in 50% Dataset : 1749

Number of Sequence in Full Dataset : 3454

Average sequence length: 168.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13385	D7MJN2_ARALL_12_175	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13385	B7FW43_PHATC_87_261	98.5

Sequence based PCA Plot of the family - PF13385 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=11
Motif2 Start=20 Length=8
Motif3 Start=52 Length=11
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay