3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13384

Details:

PFam ID : PF13384

PFam Domain Description : Homeodomain-like domain

Number of Sequence in 50% Dataset : 429

Number of Sequence in Full Dataset : 964

Average sequence length: 46.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13384	Q4A256_EHV86_23_259	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13384	B6GA98_9ACTN_10_58	99.6

Sequence based PCA Plot of the family - PF13384 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay