3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13383

Details:

PFam ID : PF13383

PFam Domain Description : Methyltransferase domain

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 141

Average sequence length: 201.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13383	Q4A256_EHV86_23_259	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13383	B8LCT2_THAPS_61_200	100

Sequence based PCA Plot of the family - PF13383 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=147 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay