3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13380

Details:

PFam ID : PF13380

PFam Domain Description : CoA binding domain

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 1613

Average sequence length: 122.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13380	B3TAG9_9ARCH_256_316	77.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13380	B3TAG9_9ARCH_256_316	99.9

Sequence based PCA Plot of the family - PF13380 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=17
Motif2 Start=47 Length=8
Motif3 Start=130 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay