3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13379

Details:

PFam ID : PF13379

PFam Domain Description : NMT1-like family

Number of Sequence in 50% Dataset : 410

Number of Sequence in Full Dataset : 1673

Average sequence length: 236.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13379	B6GWV1_PENCW_265_391	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13379	A2SQE6_METLZ_234_410	100

Sequence based PCA Plot of the family - PF13379 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=18
Motif2 Start=55 Length=11
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay