3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13378

Details:

PFam ID : PF13378

PFam Domain Description : Enolase C-terminal domain-like

Number of Sequence in 50% Dataset : 222

Number of Sequence in Full Dataset : 1577

Average sequence length: 110.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13378	B6GWV1_PENCW_265_391	85.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13378	Q0QZW5_9SPHN_175_251	99.9

Sequence based PCA Plot of the family - PF13378 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=21 Length=8
Motif3 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay