3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13376

Details:

PFam ID : PF13376

PFam Domain Description : Bacteriocin-protection, YdeI or OmpD-Associated

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 447

Average sequence length: 61.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13376	A1ZDI5_9BACT_115_177	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13376	A1ZDI5_9BACT_115_177	100

Sequence based PCA Plot of the family - PF13376 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=18
Motif2 Start=42 Length=11
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay