3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13374

Details:

PFam ID : PF13374

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 1329

Number of Sequence in Full Dataset : 3289

Average sequence length: 38.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13374	Q7RXE6_NEUCR_211_322	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13374	Q2GN73_CHAGB_912_953	90.2

Sequence based PCA Plot of the family - PF13374 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay