3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13373

Details:

PFam ID : PF13373

PFam Domain Description : DUF2407 C-terminal domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 71

Average sequence length: 126.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13373	Q7RXE6_NEUCR_211_322	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13373	A5DLW1_PICGU_168_317	100

Sequence based PCA Plot of the family - PF13373 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=18
Motif2 Start=38 Length=8
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay