3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13372

Details:

PFam ID : PF13372

PFam Domain Description : Domain of unknown function (DUF4104)

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 236

Average sequence length: 175.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13372	C9TR76_9RHIZ_391_487	69.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13372	F0BF47_9XANT_245_498	100

Sequence based PCA Plot of the family - PF13372 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay